[SOLVED] upgrade issue from 5.4 to 6

I

ilia987

Well-Known Member
Sep 9, 2019
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i have done an upgrade on my cluster from 5.4 to 6,
but it failed on one of the nodes
currently the cluster is up and running, and i

zfs-initramfs : Depends: zfsutils-linux (>= 0.8.2-pve1) but 0.7.13-pve1~bpo2 is installed
zfs-zed : Depends: zfsutils-linux (>= 0.8.2-pve1) but 0.7.13-pve1~bpo2 is installed

any idea what i can do ?
 
please post the output of:
* `pveversion -v`
* `apt update`
* `apt full-upgrade`
 
Stoiko Ivanov said:
please post the output of:
* `pveversion -v`
* `apt update`
* `apt full-upgrade`
Click to expand...

pveversion -v
Bash: 
pveversion -v
proxmox-ve: 6.0-2 (running kernel: 5.0.21-3-pve)
pve-manager: 6.0-9 (running version: 6.0-9/508dcee0)
pve-kernel-5.0: 6.0-9
pve-kernel-helper: 6.0-9
pve-kernel-4.15: 5.4-9
pve-kernel-5.0.21-3-pve: 5.0.21-7
pve-kernel-4.15.18-21-pve: 4.15.18-48
pve-kernel-4.15.18-20-pve: 4.15.18-46
pve-kernel-4.15.18-9-pve: 4.15.18-30
pve-kernel-4.15.18-1-pve: 4.15.18-19
pve-kernel-4.4.35-1-pve: 4.4.35-76
pve-kernel-4.4.19-1-pve: 4.4.19-66
ceph-fuse: 12.2.11+dfsg1-2.1+b1
corosync: 3.0.2-pve4
criu: 3.11-3
glusterfs-client: 5.5-3
ksm-control-daemon: 1.3-1
libjs-extjs: 6.0.1-10
libknet1: 1.13-pve1
libpve-access-control: 6.0-2
libpve-apiclient-perl: 3.0-2
libpve-common-perl: 6.0-5
libpve-guest-common-perl: 3.0-1
libpve-http-server-perl: 3.0-3
libpve-storage-perl: 6.0-9
libqb0: 1.0.5-1
lvm2: 2.03.02-pve3
lxc-pve: 3.1.0-65
lxcfs: 3.0.3-pve60
novnc-pve: 1.1.0-1
proxmox-mini-journalreader: 1.1-1
proxmox-widget-toolkit: 2.0-8
pve-cluster: 6.0-7
pve-container: 3.0-7
pve-docs: 6.0-7
pve-edk2-firmware: 2.20190614-1
pve-firewall: 4.0-7
pve-firmware: 3.0-2
pve-ha-manager: 3.0-2
pve-i18n: 2.0-3
pve-qemu-kvm: 4.0.0-7
pve-xtermjs: 3.13.2-1
qemu-server: 6.0-9
smartmontools: 7.0-pve2
spiceterm: 3.1-1
vncterm: 1.6-1
zfsutils-linux: 0.7.13-pve1~bpo2

apt update
Bash: 
Hit:1 http://repo.pbis.beyondtrust.com/apt pbiso InRelease
Hit:2 http://ftp.debian.org/debian buster InRelease                                           
Hit:3 http://security.debian.org buster/updates InRelease                                         
Hit:4 http://download.proxmox.com/debian/corosync-3 stretch InRelease
Hit:5 http://download.proxmox.com/debian/pve buster InRelease
Reading package lists... Done
Building dependency tree       
Reading state information... Done
2 packages can be upgraded. Run 'apt list --upgradable' to see them.
apt full-upgrade
Bash: 
Reading package lists... Done
Building dependency tree       
Reading state information... Done
You might want to run 'apt --fix-broken install' to correct these.
The following packages have unmet dependencies:
 zfs-initramfs : Depends: zfsutils-linux (>= 0.8.2-pve1) but 0.7.13-pve1~bpo2 is installed
 zfs-zed : Depends: zfsutils-linux (>= 0.8.2-pve1) but 0.7.13-pve1~bpo2 is installed
E: Unmet dependencies. Try 'apt --fix-broken install' with no packages (or specify a solution).
 
hmm - `apt update` output looks clean...
in any case - you should consider removing the corosync-3 repository (since you've upgraded to buster)

What's the output of 'apt --fix-broken install' ?
 
Stoiko Ivanov said:
hmm - `apt update` output looks clean...
in any case - you should consider removing the corosync-3 repository (since you've upgraded to buster)

What's the output of 'apt --fix-broken install' ?
Click to expand...
corosync-3 removed.

apt --fix-broken install
Bash: 
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Correcting dependencies... Done
The following additional packages will be installed:
  zfsutils-linux
Suggested packages:
  nfs-kernel-server samba-common-bin
The following packages will be upgraded:
  zfsutils-linux
1 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
3 not fully installed or removed.
Need to get 0 B/355 kB of archives.
After this operation, 160 kB of additional disk space will be used.
Do you want to continue? [Y/n] Y
Reading changelogs... Done
(Reading database ... 164920 files and directories currently installed.)
Preparing to unpack .../zfsutils-linux_0.8.2-pve1_amd64.deb ...
Unpacking zfsutils-linux (0.8.2-pve1) over (0.7.13-pve1~bpo2) ...
dpkg: error processing archive /var/cache/apt/archives/zfsutils-linux_0.8.2-pve1_amd64.deb (--unpack):
 trying to overwrite '/usr/share/man/man5/spl-module-parameters.5.gz', which is also in package spl-dkms 0.7.12-2
dpkg-deb: error: paste subprocess was killed by signal (Broken pipe)
Errors were encountered while processing:
 /var/cache/apt/archives/zfsutils-linux_0.8.2-pve1_amd64.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
 
ilia987 said:
dpkg: error processing archive /var/cache/apt/archives/zfsutils-linux_0.8.2-pve1_amd64.deb (--unpack): trying to overwrite '/usr/share/man/man5/spl-module-parameters.5.gz', which is also in package spl-dkms 0.7.12-2
Click to expand...
seems the system somehow installed the dkms packages from debian upstream. (PVE does not ship the dkms packages)

Try removing zfs-dkms and spl-dkms - and run apt install -f afterwards
 
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Stoiko Ivanov said:
seems the system somehow installed the dkms packages from debian upstream. (PVE does not ship the dkms packages)

Try removing zfs-dkms and spl-dkms - and run apt install -f afterwards
Click to expand...

thanks, it worked
i removed zfs-dkms spl-dkms zfsutils-linux zfs-initramfs zfs-zed zfsutils
and then installed zfsutils
now all seems stable. (trying to reboot the server to make sure all is working)
 
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consider readding zfs-zed, zfs-initramfs as well
 
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