After upgrading to pve 8 autoremove not able to remove packages

[rvdmeer]

Today i've been updating from pve 7 to pve 8.
However after the upgrade and reboot I'm getting this error.
All seems to work but not sure if i can remove things like apparmor.

root@su01prox01:~# apt autoremove
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
10 not fully installed or removed.
After this operation, 0 B of additional disk space will be used.
Setting up apparmor (3.0.8-3) ...
dpkg: error processing package apparmor (--configure):
 cannot compute MD5 digest for file '/etc/apparmor.d/abstractions/bash': failed to read (Input/output error)
dpkg: dependency problems prevent configuration of lxc-pve:
 lxc-pve depends on apparmor; however:
  Package apparmor is not configured yet.


dpkg: error processing package lxc-pve (--configure):
 dependency problems - leaving unconfigured
Setting up bridge-utils (1.7.1-1) ...
dpkg: error processing package bridge-utils (--configure):
 cannot compute MD5 digest for file '/etc/default/bridge-utils': failed to read (Input/output error)
Setting up console-setup-linux (1.221) ...
dpkg: error processing package console-setup-linux (--configure):
 cannot compute MD5 digest for file '/etc/console-setup/compose.ISO-8859-11.inc': failed to read (Input/output error)
dpkg: dependency problems prevent configuration of console-setup:
 console-setup depends on console-setup-linux | console-setup-freebsd | hurd; however:
  Package console-setup-linux is not configured yet.
  Package console-setup-freebsd is not installed.
  Package hurd is not installed.


dpkg: error processing package console-setup (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of pve-container:
 pve-container depends on lxc-pve; however:
  Package lxc-pve is not configured yet.


dpkg: error processing package pve-container (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of pve-manager:
 pve-manager depends on pve-container (>= 5.1.11); however:
  Package pve-container is not configured yet.


dpkg: error processing package pve-manager (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of proxmox-ve:
 proxmox-ve depends on pve-manager (>= 8.0.4); however:
  Package pve-manager is not configured yet.


dpkg: error processing package proxmox-ve (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of pve-ha-manager:
 pve-ha-manager depends on pve-container (>= 5.0.1); however:
  Package pve-container is not configured yet.


dpkg: error processing package pve-ha-manager (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of qemu-server:
 qemu-server depends on pve-ha-manager (>= 3.0-9); however:
  Package pve-ha-manager is not configured yet.


dpkg: error processing package qemu-server (--configure):
 dependency problems - leaving unconfigured
Errors were encountered while processing:
 apparmor
 lxc-pve
 bridge-utils
 console-setup-linux
 console-setup
 pve-container
 pve-manager
 proxmox-ve
 pve-ha-manager
 qemu-server

 

[aaron]

Input/output error

How is the disk and file system doing? Those are worrying. Check the journal of there are any I/O errors reported by the kernel.
journalctl --grep 'I/O'

 

[rvdmeer]

Yeah I saw that one as well but no errors. Filesystem seems to be fine and the disk (no SMART errors) itself as well

 

[rvdmeer]

Update: I removed several files mentioned with the IO error.
After that when running apt autoremove it asked to place the default version.
This is what I did and now all works. Currently running a long smartctl test