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You hit the nail on the head, It has the hybrid-uefi feature (aka broken UEFI) and gigabyte hasn't provided a patch since 2014. As i tried both modes with proxmox, i decided to load freenas in bios mode. It loaded with no issues and ZFS is running smoothly. I'm going to park this here but...

Ah amazing, i'll give that a go. Im using a very old and cheap gigabyte mobo so i'm also thinking the EFI/BIOS firmware is playing up. Really appreciate the breakdown, thanks @FourtyTwo !

Just to validate this, I'm having the same issue. I'm trying to install a root ZFS RaidZ-1 on x3 120GB SATA3 SSDs. The boot fails with "no root device found" and i'm thrown to busybox System Gigabyte SKT-AM3 78LMT-USB3 / AMD 6300 6 Core sh1theap / 32GB DDR3 RAM / x3 SATA Sandisk 120GB SSDs...