Below is what I did. All is fine now. I'm never updating from the web interface again :)
# fuser /var/lib/dpkg/lock /var/lib/apt/lists/lock
/var/lib/dpkg/lock: 728564
# fuser -k /var/lib/dpkg/lock /var/lib/apt/lists/lock
/var/lib/dpkg/lock: 728564
# apt-get install proxmox-ve-2.6.32
E...
I'm having the exact same issue. I too did use the UPDATES tab, the VNC window just disappeared. Now have no access to web interface.
I can ssh in and the output of pveversion -v is pretty much the sam as the op.
proxmox-ve-2.6.32: not correctly installed (running kernel: 2.6.32-34-pve)...
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