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Other than the question marks appearing in the GUI, does everything still behave as normal (i.e., backups still run, VMs carry out their functions, internet accessible)? Do your nodes/VMs happen to depend on a network-connected storage? Also, could you post your version of proxmox and its...

Try running lsof /etc/pve/nodes/nodename/.fuse_hiddenXXXX to find out which process is using the file. The problem could be related to some shared storage devices that are still present.

Are these nodes running within a cluster? The issue could be related to pvestatd. This daemon queries the status of VMs in the cluster and sends this information throughout the cluster. Try checking the output of pvestatd status if the problem occurs again, to see if it's running. You can also...