This way it will work. Make your vlan interfaces to bridges:
auto vmbr0
iface vmbr0 inet manual
bridge-ports eno1 # Your physical NIC
bridge-stp off
bridge-fd 0
bridge-vlan-aware yes
bridge-vids 2-4094
auto vmbr0.100
iface vmbr0.100 inet manual
bridge-ports vmbr0...